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1

High Cholesterol/Low Cholesterol: Effects in Biological Membranes Review

Subczynski, Witold K., Pasenkiewicz-Gierula, Marta, Widomska, Justyna, Mainali, Laxman, Raguz, Marija

Journal:

Cell Biochemistry and Biophysics

Year:

2017

Language:

english

File:

PDF, 1.48 MB

english, 2017

2

The behaviour of β-carotene in the phosphatidylcholine bilayer as revealed by a molecular simulation study

Małgorzata Jemioła-Rzemińska, Marta Pasenkiewicz-Gierula, Kazimierz Strzałka

Journal:

Chemistry and Physics of Lipids

Year:

2005

Language:

english

File:

PDF, 601 KB

english, 2005

3

Oriented Self-Association of Copper(II) Tetraphenylporphine in Liquid-Crystalline Lipid Bilayer Membranes: An EPR Study

Subczynski, Witold K., Pasenkiewicz-Gierula, Marta, Antholine, William E., Hyde, James S.

Journal:

Journal of the American Chemical Society

Year:

1999

Language:

english

File:

PDF, 76 KB

english, 1999

4

Communication: Consistent picture of lateral subdiffusion in lipid bilayers: Molecular dynamics simulation and exact results

Kneller, Gerald R., Baczynski, Krzysztof, Pasenkiewicz-Gierula, Marta

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 911 KB

english, 2011

5

Ordering effects of cholesterol and its analogues

Tomasz Róg, Marta Pasenkiewicz-Gierula, Ilpo Vattulainen, Mikko Karttunen

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2009

Language:

english

File:

PDF, 4.01 MB

english, 2009

6

Study of PEGylated Lipid Layers as a Model for PEGylated Liposome Surfaces: Molecular Dynamics Simulation and Langmuir Monolayer Studies

Stepniewski, Michał, Pasenkiewicz-Gierula, Marta, Róg, Tomasz, Danne, Reinis, Orlowski, Adam, Karttunen, Mikko, Urtti, Arto, Yliperttula, Marjo, Vuorimaa, Elina, Bunker, Alex

Journal:

Year:

2011

Language:

english

File:

PDF, 3.20 MB

english, 2011

7

What Happens if Cholesterol Is Made Smoother

Róg, Tomasz, Pasenkiewicz-Gierula, Marta, Vattulainen, Ilpo, Karttunen, Mikko

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 598 KB

english, 2007

8

Rotational diffusion of a steroid molecule in phosphatidylcholine membranes: effects of alkyl chain length, unsaturation, and cholesterol as studied by a spin-label method

Kusumi, Akihiro, Pasenkiewicz-Gierula, Marta

Journal:

Year:

1988

Language:

english

File:

PDF, 1.06 MB

english, 1988

9

Effect of Double Bond Position on Lipid Bilayer Properties: Insight through Atomistic Simulations

Martinez-Seara, Hector, Róg, Tomasz, Pasenkiewicz-Gierula, Marta, Vattulainen, Ilpo, Karttunen, Mikko, Reigada, Ramon

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 256 KB

english, 2007

10

Refined OPLS All-Atom Force Field Parameters for n -Pentadecane, Methyl Acetate, and Dimethyl Phosphate

Murzyn, Krzysztof, Bratek, Maciej, Pasenkiewicz-Gierula, Marta

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 2.06 MB

english, 2013

11

Stereochemistry of terpene derivatives. Part 3: Hydrolytic kinetic resolution as a convenient approach to chiral aminohydroxyiminocaranes with local anaesthetic activity

Stanisław Lochyński, Bożena Frąckowiak, Tadeusz Librowski, Ryszard Czarnecki, Jacek Grochowski, Paweł Serda, Marta Pasenkiewicz-Gierula

Journal:

Tetrahedron: Asymmetry

Year:

2002

Language:

english

File:

PDF, 419 KB

english, 2002

12

Construction of a toroidal model for the magainin pore

Krzysztof Murzyn, Marta Pasenkiewicz-Gierula

Journal:

Journal of Molecular Modeling

Year:

2003

Language:

english

File:

PDF, 501 KB

english, 2003

13

Spin-label studies on phosphatidylcholine-cholesterol membranes: effects of alkyl chain length and unsaturation in the fluid phase

Akihiro Kusumi, Witold K. Subczynski, Marta Pasenkiewicz-Gierula, James S. Hyde, Hellmut Merkle

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

1986

Language:

english

File:

PDF, 835 KB

english, 1986

14

Molecular Dynamics of a Vasopressin V2 Receptor in a Phospholipid Bilayer Membrane

Czaplewski, Cezary, Pasenkiewicz-Gierula, Marta, Ciarkowski, Jerzy

Journal:

Journal of Receptor and Signal Transduction Research

Year:

1999

Language:

english

File:

PDF, 1.24 MB

english, 1999

15

Structural Properties of the Water/Membrane Interface of a Bilayer Built of the E. coli Lipid A

Murzyn, Krzysztof, Pasenkiewicz-Gierula, Marta

Journal:

Journal of Physical Chemistry B

Year:

2015

Language:

english

File:

PDF, 2.31 MB

english, 2015

16

Inverse hexagonal phase of poly-unsaturated monogalactolipid: A computer model and analysis

Bratek, Lukasz, Markiewicz, Michal, Baczynski, Krzysztof, Jalocha-Bratek, Joanna, Pasenkiewicz-Gierula, Marta

Journal:

Journal of Molecular Liquids

Year:

2019

File:

PDF, 1.59 MB

2019

17

Cis and Trans Unsaturated Phosphatidylcholine Bilayers: A Molecular Dynamics Simulation Study

Kulig, Waldemar, Pasenkiewicz-Gierula, Marta, Róg, T.

Journal:

Chemistry and Physics of Lipids

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

18

Cholesterol Effects on the Phosphatidylcholine Bilayer Polar Region: A Molecular Simulation Study

Pasenkiewicz-Gierula, Marta, Róg, Tomasz, Kitamura, Kunihiro, Kusumi, Akihiro

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 825 KB

english, 2000

19

Effects of the Lipid Bilayer Phase State on the Water Membrane Interface

Stȩpniewski, Michał, Bunker, Alex, Pasenkiewicz-Gierula, Marta, Karttunen, Mikko, Róg, Tomasz

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 4.73 MB

english, 2010

20

Tilt: Major Factor in Sterols' Ordering Capability in Membranes

Aittoniemi, Jussi, Róg, Tomasz, Niemelä, Perttu, Pasenkiewicz-Gierula, Marta, Karttunen, Mikko, Vattulainen, Ilpo

Journal:

Journal of Physical Chemistry B

Year:

2006

Language:

english

File:

PDF, 88 KB

english, 2006

21

Replacing the Cholesterol Hydroxyl Group with the Ketone Group Facilitates Sterol Flip-Flop and Promotes Membrane Fluidity

Róg, Tomasz, Stimson, Lorna M., Pasenkiewicz-Gierula, Marta, Vattulainen, Ilpo, Karttunen, Mikko

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 582 KB

english, 2008

22

Non-polar interactions between cholesterol and phospholipids: a molecular dynamics simulation study

Tomasz Róg, Marta Pasenkiewicz-Gierula

Journal:

Biophysical Chemistry

Year:

2004

Language:

english

File:

PDF, 572 KB

english, 2004

23

Effects of Epicholesterol on the Phosphatidylcholine Bilayer: A Molecular Simulation Study

Róg, Tomasz, Pasenkiewicz-Gierula, Marta

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 207 KB

english, 2003

24

Charge Pairing of Headgroups in Phosphatidylcholine Membranes: A Molecular Dynamics Simulation Study

Pasenkiewicz-Gierula, Marta, Takaoka, Yuji, Miyagawa, Hiroo, Kitamura, Kunihiro, Kusumi, Akihiro

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 622 KB

english, 1999

25

Cholesterol-Sphingomyelin Interactions: A Molecular Dynamics Simulation Study

Róg, Tomasz, Pasenkiewicz-Gierula, Marta

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 375 KB

english, 2006

26

Refined OPLS All-Atom Force Field for Saturated Phosphatidylcholine Bilayers at Full Hydration

Maciejewski, Arkadiusz, Pasenkiewicz-Gierula, Marta, Cramariuc, Oana, Vattulainen, Ilpo, Rog, Tomasz

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 2.99 MB

english, 2014

27

Rotational Motion of Square Planar Copper Complexes in Solution and Phospholipid Bilayer Membranes

Pasenkiewicz-Gierula, Marta, Subczynski, Witold K., Antholine, William E.

Journal:

Journal of Physical Chemistry B

Year:

1997

Language:

english

File:

PDF, 236 KB

english, 1997

28

Phase Behavior of Cholesterol Crystals Formed in Water from Pure Cholesterol and from Cholesterol/Phospholipid Mixtures

Mainali, Laxman, Pasenkiewicz-Gierula, Marta, Subczynski, Witold

Journal:

Biophysical Journal

Year:

2019

File:

PDF, 43 KB

2019

29

Fitmunk : improving protein structures by accurate, automatic modeling of side-chain conformations

Porebski, Przemyslaw Jerzy, Cymborowski, Marcin, Pasenkiewicz-Gierula, Marta, Minor, Wladek

Journal:

Acta Crystallographica Section D Structural Biology

Year:

2016

Language:

english

File:

PDF, 2.86 MB

english, 2016

30

Asymmetric Spontaneous Intercalation of Lutein into a Phospholipid Bilayer, a Computational Study

Makuch, Krzysztof, Markiewicz, Michal, Pasenkiewicz-Gierula, Marta

Journal:

Computational and Structural Biotechnology Journal

Year:

2019

Language:

english

File:

PDF, 762 KB

english, 2019

31

Effect of replacement of cholesterol hydroxyl group by ketone group

Tomasz Róg, Lorna M. Stimson, Marta Pasenkiewicz-Gierula, Ilpo Vattulainen, Mikko Karttunen

Journal:

Chemistry and Physics of Lipids

Year:

2007

Language:

english

File:

PDF, 65 KB

english, 2007

32

Interplay of Unsaturated Phospholipids and Cholesterol in Membranes: Effect of the Double-Bond Position

Martinez-Seara, Hector, Róg, Tomasz, Pasenkiewicz-Gierula, Marta, Vattulainen, Ilpo, Karttunen, Mikko, Reigada, Ramon

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 232 KB

english, 2008

33

Multifrequency ESR with Fourier analysis of copper(II)-(histidine)n. 2. Mobile phase

Pasenkiewicz-Gierula, Marta, Froncisz, Wojciech, Basosi, Riccardo, Antholine, William E., Hyde, James S.

Journal:

Inorganic Chemistry

Year:

1987

Language:

english

File:

PDF, 613 KB

english, 1987

34

Assessment of the ESR spectra of copper 3-ethoxy-2-oxobutyraldehyde bis(thiosemicarbazonate) complexes CuKTSM2

Pasenkiewicz-Gierula, Marta, Antholine, William E., Subczynski, Witold K., Baffa, Oswaldo, Hyde, James S., Petering, David H.

Journal:

Inorganic Chemistry

Year:

1987

Language:

english

File:

PDF, 571 KB

english, 1987

35

Inverse hexagonal phase of poly-unsaturated monogalactolipid: A computer model and analysis

Bratek, Lukasz, Markiewicz, Michal, Baczynski, Krzysztof, Jalocha-Bratek, Joanna, Pasenkiewicz-Gierula, Marta

Journal:

Journal of Molecular Liquids

Year:

2019

Language:

english

File:

PDF, 1.59 MB

english, 2019

36

Molecular Dynamics of 1-Palmitoyl-2-oleoylphosphatidylcholine Membranes Containing Transmembrane α-Helical Peptides with Alternating Leucine and Alanine Residues †

Subczynski, Witold K., Pasenkiewicz-Gierula, Marta, McElhaney, Ronald N., Hyde, James S., Kusumi, Akihiro

Journal:

Year:

2003

Language:

english

File:

PDF, 205 KB

english, 2003

37

Assessing gastric toxicity of xanthone derivatives of anti-inflammatory activity using simulation and experimental approaches

Markiewicz, Michal, Librowski, Tadeusz, Lipkowska, Anna, Serda, Pawel, Baczynski, Krzysztof, Pasenkiewicz-Gierula, Marta

Journal:

Biophysical Chemistry

Year:

2017

Language:

english

File:

PDF, 8.66 MB

english, 2017

38

Multifrequency ESR of copper(II)-(His)n (His = histidine). 1. Immobile phase

Basosi, Riccardo, Valensin, Gianni, Gaggelli, Elena, Froncisz, Wojciech, Pasenkiewicz-Gierula, Marta, Antholine, William E., Hyde, James S.

Journal:

Inorganic Chemistry

Year:

1986

Language:

english

File:

PDF, 602 KB

english, 1986

39

Comparative Computer Simulation Study of Cholesterol in Hydrated Unary and Binary Lipid Bilayers and in an Anhydrous Crystal

Plesnar, Elzbieta, Subczynski, Witold K., Pasenkiewicz-Gierula, Marta

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 1.93 MB

english, 2013

40

Hydrogen Bonding of Water to Phosphatidylcholine in the Membrane As Studied by a Molecular Dynamics Simulation: Location, Geometry, and Lipid−Lipid Bridging via Hydrogen-Bonded Water

Pasenkiewicz-Gierula, Marta, Takaoka, Yuji, Miyagawa, Hiroo, Kitamura, Kunihiro, Kusumi, Akihiro

Journal:

Journal of Physical Chemistry A

Year:

1997

Language:

english

File:

PDF, 1.39 MB

english, 1997

41

Properties of the Membrane Binding Component of Catechol- O -methyltransferase Revealed by Atomistic Molecular Dynamics Simulations

Orłowski, Adam, St-Pierre, Jean-François, Magarkar, Aniket, Bunker, Alex, Pasenkiewicz-Gierula, Marta, Vattulainen, Ilpo, Róg, Tomasz

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 8.00 MB

english, 2011

42

Saturation with cholesterol increases vertical order and smoothes the surface of the phosphatidylcholine bilayer: A molecular simulation study

Elżbieta Plesnar, Witold K. Subczynski, Marta Pasenkiewicz-Gierula

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2012

Language:

english

File:

PDF, 1.70 MB

english, 2012

43

Cholesterol effects on the phospholipid condensation and packing in the bilayer: a molecular simulation study

Tomasz Róg, Marta Pasenkiewicz-Gierula

Journal:

Year:

2001

Language:

english

File:

PDF, 126 KB

english, 2001

44

Phosphatidylethanolamine-Phosphatidylglycerol Bilayer as a Model of the Inner Bacterial Membrane

Murzyn, Krzysztof, Róg, Tomasz, Pasenkiewicz-Gierula, Marta

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 389 KB

english, 2005

45

The Interactions of Dopamine and L-Dopa with Lipid Headgroup and its Implication for Neurotransmitters Metabolism

Orlowski, Adam, Grzybek, Michał, Bunker, Alex, Pasenkiewicz-Gierula, Marta, Vattulainen, Ilpo, Männistö, Pekka T., Róg, Tomasz

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 107 KB

english, 2013

46

Properties of water hydrating the galactolipid and phospholipid bilayers: a molecular dynamics simulation study

Markiewicz, Michał, Baczyński, Krzysztof, Pasenkiewicz-Gierula, Marta

Journal:

Acta Biochimica Polonica

Year:

2015

Language:

english

File:

PDF, 1.99 MB

english, 2015

47

Hypothetical Pathway for Formation of Cholesterol Microcrystals Initiating the Atherosclerotic Process

Subczynski, Witold K., Pasenkiewicz-Gierula, Marta

Journal:

Cell Biochemistry and Biophysics

Year:

2020

File:

PDF, 615 KB

2020

48

Molecular Dynamics Generation of Nonarbitrary Membrane Models Reveals Lipid Orientational Correlations

Takaoka, Yuji, Pasenkiewicz-Gierula, Marta, Miyagawa, Hiroh, Kitamura, Kunihiro, Tamura, Yoshiyasu, Kusumi, Akihiro

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 1.29 MB

english, 2000

49

Effects of Phospholipid Unsaturation on the Membrane/Water Interface: A Molecular Simulation Study

Murzyn, Krzysztof, Róg, Tomasz, Jezierski, Grzegorz, Takaoka, Yuji, Pasenkiewicz-Gierula, Marta

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 403 KB

english, 2001

50

Cholesterol Effects on the Phosphatidylcholine Bilayer Nonpolar Region: A Molecular Simulation Study

Róg, Tomasz, Pasenkiewicz-Gierula, Marta

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 772 KB

english, 2001

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